ParticipantID: kduehrkop Category: category1 Authors: Kai Dührkop, Kerstin Scheubert, Sebastian Böcker Affiliations: Chair for Bioinformatics, Friedrich-Schiller-University, Jena, Germany Automatic pipeline: yes Spectral libraries: no Abstract We processed only the LC-MS challenges. The spectral data was analyzed by the sirius command line tool. We choosed the parameters of our tool according to the challenge description. We combined the scores of the isotopic patterns and the fragmentation trees computed from ms/ms spectra. The pubchem molecular formula search was used to assign adducts to the ions. If no formula was found in pubchem, we assumed a protonation. For intrinsic charged formulas, we added a protonated variant with a slightly reduced score.