News
March 18th, 2015
The results and winners of CASMI-2014 are now up. March 3rd, 2015
The solutions for CASMI-2014 are now available on the website. January 15th, 2015
The CASMI 2014 Challenges submissions deadline has been extended to February 15th, 2015! September 15th, 2014
The CASMI 2014 Challenges are now officially available ! September 2nd, 2014
All articles of the CASMI 2013 proceedings are now online. April 30, 2014
First announcement at the Analytical Tools for Cutting-edge Metabolomics meeting.
March 18th, 2015
The results and winners of CASMI-2014 are now up. March 3rd, 2015
The solutions for CASMI-2014 are now available on the website. January 15th, 2015
The CASMI 2014 Challenges submissions deadline has been extended to February 15th, 2015! September 15th, 2014
The CASMI 2014 Challenges are now officially available ! September 2nd, 2014
All articles of the CASMI 2013 proceedings are now online. April 30, 2014
First announcement at the Analytical Tools for Cutting-edge Metabolomics meeting.
Example data (and solution)
Category 1 - The submissions
The first participant used a molecular formula calculator to obtain this result. The correct formula, C20H20NO5 is ranked #35 out of 172, with a (normalized) score of 0.0114. The second participant knew how to make use of the isotopic pattern and obtained this result. The correct formula C20H20NO5 is ranked first out of 331, with a score of 0.972. The third participant used the isotope pattern and the MS/MS to obtain the correct neutral formula C20H19NO5 in top place with a score of 0.581. A fourth potential participant determined the correct formula with score 1 and would have won the contest, but missed the submission deadline - try again for CASMI 2014!Example Metadata Submission
ParticipantID: schymane Category: category1 Authors: Schymanski, Emma(1) and Neumann, Steffen(2) Affiliations: (1) Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland (2) IPB Halle, Dept. of Stress and Developmental Biology, Halle, Germany Automatic methods: yes Abstract MOLGEN-MS/MS was used with the peak lists provided. Where no evidence of halogens was present, the elements CHNOPS were chosen. Default parameters were MS accuracy 5 ppm, MS/MS accuracy 10 ppm, using the existence filter and allowing "OEI" ions to explain MS/MS peaks. The option to use positive or negative ionisation was taken from the information on the web, using +H for positive and -H for negative. Multiple MS/MS files were combined them to get the maximum number of peaks, using the peak of highest intensity The combined match value was used as the score.
Example Challenge Submission
C20H19NO5 0.58128 C5H15N13O6 0.41143 C21H15N5O 0.32911 C4H19N9O10 0.27592 C6H11N17O2 0.19002 C2H7N23 0.09254The file can be downloaded here.